On 8/03/2012 12:19 AM, Kavosh Zandsalimi wrote:
Dear GMX users;
I hope you are well.
I want to simulate the interactions between DNA and Ag clusters. The
problem is that Amber99 ff does not know silver atoms and residues.
I have defined Ag and Au in atomtypes.atp and assigned Ag LJ
parameters in ffnonbonded.itp. But I cannot find out how to define new
residues.
http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field
Mark
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
