Dear Gromacs experts,
I did the following steps to calculate the cosine content for my MD simulation.
> g_covar -s file.pdb -f dynamic.trr -o -v> g_anaeig -s file.pdb -f dynamic.trr
> -v eigvect.trr -proj> g_analyze -f proj.xvy -cc -n 8
After the final step, I got a file call "coscont.xvg", I found the following
information in the file.
@ title "Cosine content"@ xaxis label "set / half periods"@ yaxis
label "cosine content"@TYPE xy 1 0.00227537 2 0.00387509 3 0.00021574 4
0.00747283 5 0.0538567 6 0.00278513 7 0.00263389 8 0.00138043
Would you mind to instruct me how to draw a conclusion based on the result if
my calculations has been converged?
Best regards,
Catherine
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