On 9/03/2012 6:24 PM, rama david wrote:
Hi ,
      Thank you for help.
I solve my problem for LINCS error
But now I have another problem
after mdrun command
gromacs output

 Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Martini system from nap.pdb'
5000 steps,    100.0 ps.
step 0Segmentation fault

No idea. Look at your stdout and/or log files and then consult the errors page of the GROMACS webpage.

Mark
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