On 9/03/2012 10:58 PM, a a wrote:
Dear Sir/Madam,

I am trying to install the GROMACS to my new workstation. As my old one is not belong to me, I cannot install VMD to it. Please kindly help to instruct if I did anything wrong here. Many thanks.

Follow the steps in http://www.cems.uvm.edu/~smanchu/gromacs_installation.html <http://www.cems.uvm.edu/%7Esmanchu/gromacs_installation.html>, I have done the installation fftw-3.0.1 at my "/Catherine/Gromacs/fftw-3.0.1" directory.

Follow the steps in http://fertoledo.wordpress.com/2012/01/17/how-to-calculate-cosine-content-in-amber/, i.e. [wget ftp://ftp.gromacs .org/pub/gromacs/gromacs-4.5.4.tar.gz], I have downloaded the gromacs to my Catherine/Gromacs/ folder.

Follow the steps in http://www.gromacs.org/Downloads/Installation_Instructions, I have start installing the GROMACS.

> tar  -xzvf  gromacs-4.5.4.tar.gz
> cd gromacs-4-5-4

The instruction for this command is wrong, because this is not the directory created by the previous command. Please inform the author of the tutorial.

Mark

> make clean
> ./configure --prefix=/usr/local/gromacs --program-suffix=""
> make
> make install
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However, when I do make clean, following error message appear.
make: *** No rule to make target `clean'.  Stop.
When I continously doing the make after ./configure step, I found the following 
error message:
make: *** No targets specified and no makefile found.  Stop.
Could you please kindly instruct if I have done any things stupidly wrong?  
Following is the log file for the configure.log, please kindly help.
Catherine




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