In that directory I have created some other files by the gromacs command, but
fail to on the top file. I will find the reason.
________________________________
From: Mark Abraham <[email protected]>
To:
Cc: Discussion list for GROMACS users <[email protected]>
Sent: Friday, 9 March 2012 10:31 PM
Subject: Re: [gmx-users] -p topol.top input/output error
On 9/03/2012 11:24 PM, Dialing Pretty wrote:
Hi Mark, iy says
>"Program genbox, VERSION 4.0.5
>Source code file: futil.c, line: 330
>File input/output error:
>fan1.top"
>
>And there is no indication early steps failure.
>
>Any suggestions?
Either the tutorial is wrong (and you just happen to be the first to
notice), or you've done something wrong, such as working in a
directory where you cannot create files. There's lots of
possibilities, however.
Mark
>Dialing
>
>
>From: Mark Abraham <[email protected]>
>To: Discussion list for GROMACS users <[email protected]>
>Sent: Friday, 9 March 2012 10:18 PM
>Subject: Re: [gmx-users] -p topol.top input/output error
>
>
>On 9/03/2012 10:52 PM, Dialing Pretty wrote:
>Dear All,
>>
>>When I use gromacs 4.0.5 practice the on-line tutorial on lysozyme, for
>>genbox -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top,
>>
>>the output says File input/output error:
>>topol.top
>>Will you please give me some suggestions on how to solve the problem?
>This file should exist. It doesn't. Presumably some
previous step failed.
>
>Mark
>
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