On 31/03/2012 10:39 AM, Eduardo Oliveira wrote:
Hi,

I'm trying to set up a configuration file to but i keep gettin an error after the grompp_d run. I'm using the command line as follows:

grompp_d -f stpr.mdp -c sistema_boxwater.gro -p sistema.top -o sistema_stpr.tpr -n
Text in bold correspond to my files.

This is what i got:

File input/output error:
index.ndx


If you specify -n, then grompp needs to be able to find and read a file. The default filename is index.ndx, but that isn't working. You need to find out why.

Mark
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