Acoot Brett wrote:
Dear All,
I just run a pdb2gmx of a protein, the error message is "
Fatal error:
Atom CG is used in an interaction of type atom in the topology
database, but an atom of that name was not found in residue
number 5."
According to the sugestion I have tried to find the reason in "
http://www.gromacs.org/Documentation/Errors";
But in that part of Document no this error was explained.
It means that there is an atom named "CG" in the .rtp entry for whatever residue
5 is, but your coordinate file has no such atom. Either you have a naming
mismatch or a missing atom.
-Justin
I am looking forward to getting an explaination from you.
Cheers,
Acoot
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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