Hi Javier, I did tried using the swisspdb for adding missing atoms still am receiving the same error.
On Wed, Apr 18, 2012 at 3:44 PM, Javier Cerezo <[email protected]> wrote: > Your PDB structure have probably some missing atoms. Check if this is the > case for residue nr. 7. > > To solve it you can use an external tool to process your PDB file adding > the missing atoms. I've used SwissPDB and worked fine. > > Javier > > El 18/04/12 11:24, aiswarya pawar escribió: > > Hi Users, > > I did the following step= > pdb2gmx -ignh -f 1ahw.pdb -o sample.pdb -p sample.top > > > and received an error= Atom ND1 not found in residue seq.nr. 7 while > adding atom. > > I dont understand how do i rectify this. > > > -- > Aiswarya > > > > -- > Javier CEREZO BASTIDA > PhD Student > Physical Chemistry > Universidad de Murcia > Murcia (Spain) > Tel: (+34)868887434 > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Aiswarya B Pawar Project Assistant, Bioinformatics Dept, Indian Institute of Science Bangalore
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