On 4/23/12 7:12 AM, Shima Arasteh wrote:
I made it as the format of .top and .itp files, but still get the same error.
If you have a topology (either .top or .itp), there is no need to run pdb2gmx.
-Justin
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*From:* Shima Arasteh <[email protected]>
*To:* Discussion list for GROMACS users <[email protected]>
*Sent:* Monday, April 23, 2012 3:05 PM
*Subject:* [gmx-users] .top file for POPC membrane
Dear all gmx users,
I performed the pdb2gmx to get the .top file, but I faced this error: " Residue
'POP' not found in residue topology database ". So I decided to make a top file.
How can I make the .top file for popc.itp?
Anybody can guide me please?
Thanks in advance,
Shima
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========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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