On 5/3/12 10:39 AM, [email protected] wrote:
Than you very much for your reply.
I'm using ffnonbonded.itp etc. I still have some doubts regarding to the
topology file which has to be used. Should I work and modify the topology
file associated with the protein by adding the information related to the
DPPC lipids as reported in the manual? I mean: is it ok if I use the
topology file created at the beginning from pdb2gmx command on the protein
and modify it?
That is an appropriate workflow. The tutorial walks you through all the
necessary steps, so do follow it carefully.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
