Hello all, I have used g_hbond with -hbn option to generate a .ndx file that has Acceptor - Donor - Hydrogen in each line of the last index group.
But I wonder I could I use this index file to monitor each hydrogen bond specified by these triplets along the trajectory? Also, I understand that the -ins in no longer available. But how can we analyze those water-mediated hydrogen bonds? Thanks for any suggestion, Yun
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