On 5/8/12 11:40 AM, Za Pour wrote:
Dear gmx users
I am simulating a system involving carbon nanotube.
I successfully completed the EM,NVT and NPT equilibration phase and then
started to run production simulation(NVT ensemble) for 10 ns.However,
after passing more than 500000 steps(1 ns),I gave the segmentation error.I
investigated log file but it did not contain any errors so I used tpbconv and
mdrun to restart the simulation.I would be pleased if you could tell me whether
restarting the simulation after segmentation fault is correct or not?
More often than not, a segmentation fault indicates the system is unstable and
will likely crash again. The log file will not indicate any errors, but
information printed to stderr/stdout will.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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