On 5/9/12 8:37 AM, mohan maruthi sena wrote:
Hi all,
I try to build go model(which uses only c-alpha atoms), my pdb
contains only c-alpha atoms extracted from the original pdb file ,when i use
pdb2gmx command on c-alpha containing pdb file it gives the following error.
Atom N is used in an interaction of type atom in the topology
database, but an atom of that name was not found in residue
number 1.
Please suggest me a way ,
pdb2gmx is not suited for building such a topology.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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