Dear gmx users,
I changed the aminoacids.rtp file recently.
Now, when I run pdb2gmx, I get the fatal error:
atom H is missing in residue For 0 in the pdb file
You might need to add atom H to the hydrogen database of building
block For
in the file aminoacids.hdb
-Is it may as a result of some problems in .rtp file?
-May I use -missing option and get a appropriate output? As I see in manual, I
can use this option when I want to generate specialized topologies for amino
acid-like molecules to take advantage of .rtp entries. The part which I entered
in .rtp file is a formyl as the N-terminal for the protein. I guess I can use
-missing option, Can't I?
Sincerely,
Shima
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