Dear Users, I am simulation bilayer composed of 81 DOPC and 21 cardiolipin (CL) in a box size 6*6*20 (nm^3). For making this system I used DOPC system with a zero surface tension and then I replaced each DOPC with one CL.
Now, I got strange result, after long run, some of lipid (most of them are cardiolipin) fly away from bilayer and come inside the water. Does anybody know what is the problem? How should I fix my system? I am using Coarse grained model using MARTINI force field. Thanks, Dariush -- Kind Regards, Dariush Mohammadyani Department of Structural Biology University of Pittsburgh School of Medicine Biomedical Science Tower 3 3501 Fifth Avenue Pittsburgh, PA 15261 USA
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