Respected sir, I am studying about micelle formation .. After setting box and adding water i went for energy minimization and then went for nvt equilibration for 1ns. when i visualized my nvt.pdb file, i found that my protein comes together and formed three micelle like structure. but my box got separated. i dono why i got two separate box.
can anyone tell me why this occurs.. i tried many times.. but still i am getting the same.. but i already performed dynamics for 30 monomers.. that time it went well.. now i am getting my output like this.. i checked the system temperature.. its in equilibrium at 299.9k. please help me with your answer.. Thanking you.
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