Sure, this is the way to make forcefield for your molecule. Also, please check literature.
Good luck, Dariush On Mon, May 21, 2012 at 9:26 AM, francesco oteri <[email protected]>wrote: > Hi Dariush, > I've checked but it seems there no parameters for my detergent. > > Actully there are parameters for the polar head and the lipidic tail, so > it is worth trying to merge them > to have the correct representation! > > Francesco > > 2012/5/21 Dariush Mohammadyani <[email protected]> > >> Have you checked MARTINI website? >> http://md.chem.rug.nl/cgmartini/index.php/downloads/force-field-parameters >> >> Dariush >> >> >> >> >> Kind Regards, >> Dariush Mohammadyani >> Department of Structural Biology >> University of Pittsburgh School of Medicine >> Biomedical Science Tower 3 >> 3501 Fifth Avenue >> Pittsburgh, PA 15261 >> USA >> >> >> >> On Sun, May 20, 2012 at 1:01 PM, francesco oteri < >> [email protected]> wrote: >> >>> Dear gromacs users, >>> does someone of you know whether parameters for the detergent >>> dodecyl-beta-maltoside >>> are avalaible in MARTINI forcefield? >>> >>> Thank you in advance, >>> Francesco >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Cordiali saluti, Dr.Oteri Francesco > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
