Hi Justin, Thank you for your quick reply. I tried to concatanete the trajectory files 4 times. Three out of four try, I got same error massage. But it worked for the last one.. It is a weird situation.. What could cause this?
Turgay 2012/6/1 Justin A. Lemkul <[email protected]> > > > On 6/1/12 8:02 AM, Turgay Cakmak wrote: > >> Hi gromacs users, >> I concatenated 7 trajectory files (each one has 10ns simulation) using >> "trajcat". Then, when I used "gmxcheck", I get following error. >> Reading frame 0 time 0.000 >> # Atoms 68393 >> Precision 0.001 (nm) >> Reading frame 13000 time 26000.000 >> *WARNING: Incomplete frame: nr 13739 time 27478 >> >> * >> But, when I check the non-concatenated files with gmxcheck, I didn't get >> any >> problem.. >> I am so confused. Any suggestion will be really appreciated... >> > > Try the concatenation again. Perhaps a filesystem blip caused an > incomplete frame to be written. > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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