Have you tryed online servers as http://davapc1.bioch.dundee.ac.uk/prodrg/or the Acpype (with Amber)?
2012/6/11 Marc Gordon <marcgrd...@gmail.com> > Hello again fellow gromacs users. > > I am looking to model a glucose-rhamnose disaccharide using the 53a6 > forcefield. I wanted to take a look at the naming conventions for > carbohydrates but I'm battling to find anything in the pdb2gmx force field > files. > > I downloaded a package of force fields from the GROMOS website to get an > idea about naming conventions for carbohydrates and couldn't see any > mention of rhamnose anywhere. (allose, altrose, glucose, mannose, gulose, > idose, galactose and talose are mentioned but no rhamnose). > > Does anyone have any information on naming conventions for rhamnose or > whether or not rhamnose was ever present in this force field? > > > Regards > Marc > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists