By the way, I'm also looking for a most trivial way for extraction of pdb files from my trajectory on the desired intervals. E.g I have trajectory consisted of 5000 frames and I want to obtain 10 pdb files every each 500 frames ( or selected time interval as the alternative ).
Commonly I do it manually via VMD ( save pdb option) but is there any automatic way to do it expecially for a long trajectories? James
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