Hi all,

I simulated a protein in water. When I get its 20 ns trajectory and load it in 
VMD, I see some bonds stretch suddenly and moves far strangely! Is this problem 
because of the wrong structure of the protein? Or I may put some restrains on 
system and solve this problem?
Anybody may suggest me in this about?


Thank you.

 
Sincerely,
Shima
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