Hi Gromacs Friends, I completed Justin-Lipid Tutorial. I plan to simulate protein-lipid system to study protein-lipid interaction. My Query is like
1. I plan to use DPPC (128) lipid from Tieleman Website. I removed its periodicity as per tutorial instruction.. I found that I need the z box Dimension more than 6.59650. ( I not Change x-y box Dimension , As it affect the equilibrated DPPC layer). So with help of editconf command I changed the Z box Dimension to 8.00 while x and y are same . Is these process is right or any good suggestion in my work-flow ??? 2. I wish to put lipid membrane away from protein ( Protein is not embedded in lipid ). Should I use InflateGro?? Should I use Strong position restrain during Energy minimisation??? please give me valuable Guidance With Best Wishes and regards Rama -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists