rmsf is what you are looking for. g_rmsf should help.
On Jul 14, 2012, at 16:23, Igor Druz <idruz...@gmail.com> wrote: > Hello, > > I would like to compare amplitude of motion of a specific atom in two > sets of MD simulations. Something like rms of displacements about the > equilibrium position would do. In your experience, which gromacs > analysis tools would be suitable for this? Any other insight into how > this can be done best is appreciated. > > Thank you, > Igor > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Only plain text messages are allowed! > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
