Dear All,
I want to opt for the rhombic dodecahedron box in my simulation of a protein. I am using the following command to select the type of the box "editconf -f test.gro -o test_box.gro -c -d 1.2 -bt dodecahedron" but after this if I'm seeing this protein system within the box in VMD but its not showing that dodecahedron box, instead showing rectangular one. I don't know whether I am giving the wrong command or it's coming out from VMD software. So can anyone give suggestion regarding this problem so that I can make myself confirmed by seeing the exact box, I need to have, prior to the simulation. Thanks in advance, Tarak -- Tarak Karmakar Molecular Simulation Lab. C.P.M.U JNCASR -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
