Dear All, I have been trying to perform simulation for a Protein and Ligand complex. However, when I run genion, I get an error "The solvent group SOL is not continuous: index[37530=23341, index[3754]=23606.
I remember reading someone posting a similar problem and the solution was provided, according to which we need to manipulate the co-ordinate file and topology file. But, the problem is I really cannot understand at the moment as to what exactly changes I should make in order to run it and rectify this error. I would be really grateful if someone could help me and let me know as to what exactly and how I need to incorporate the changes. Also, the co-ordinate file, should the changes be made to the one obtained after running the genbox step? Best Wishes, -- Ankita Naithani -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
