Dear Gromacs Users: When I want to place 12000 solvent molecule in the box (15*15*15) it say: number of coordinates in coordinate file (ctacyc.gro, 28794) does not match topology (topol.top, 37950) it means that I should enlarge the box to place all of solvent molecules into that. But when the system equilibrium with running pr.mdp, box become smaller till 13.9*13.9*13.9!!! What should I do with this problem? Is it a problem?!
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