Oh okay, thanks. I didn't realize warnings were just that, only warnings and
didn't stop the program. The program did not finish however, and the
problem was a Segmentation Fault. The output literally was:
Select a group: 0
Selected 0: 'System'
Reading frame 0 time 0.000
WARNING: if there are broken molecules in the trajectory file,
they can not be made whole without a run input file
Segmentation fault
Could this be related to the input file, or do you think this is something
else entirely?
Thanks,
Tom
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