Dear users, I am using the command as the following. A part of output file (secondary-structure.xvg) is as follows. 1.column: time 2.column:structure 3.column:coil ... I do not understand the meaning of 2.column. What is "structure"? What is the meaning of value there?
Greetings secondary-structure.xvg: # This file was created Mon Sep 24 09:55:49 2012 # by the following command: # do_dssp -s protein-RUN.tpr -f traj-nojump.xtc -o secondary-structure.xpm -sc secondary-structure.xvg # # do_dssp is part of G R O M A C S: # # Grunge ROck MAChoS # @ title "Secondary Structure" @ xaxis label "Time (ps)" @ yaxis label "Number of Residues" @TYPE xy @ subtitle "Structure = A-Helix + B-Sheet + B-Bridge + Turn" @ view 0.15, 0.15, 0.75, 0.85 @ legend on @ legend box on @ legend loctype view @ legend 0.78, 0.8 @ legend length 2 @ s0 legend "Structure" @ s1 legend "Coil" @ s2 legend "B-Sheet" @ s3 legend "B-Bridge" @ s4 legend "Bend" @ s5 legend "Turn" @ s6 legend "A-Helix" @ s7 legend "5-Helix" @ s8 legend "3-Helix" @ s9 legend "Chain_Separator" 0 341 74 131 4 43 38 168 0 0 1 20 331 84 119 6 37 41 165 0 6 1 40 333 78 121 8 41 39 165 0 6 1 ... -- Ahmet Yıldırım -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists