On 9/25/12 5:20 PM, Elie M wrote:

Sorry one more thing: For one of the atoms S that x2top did not assign the topology it 
said 0 bonds although S is a part of the Thiophene molecule  which is connected to two 
carbons..what does it mean "0 bonds"?


It means there is no entry in the .n2t file that matches this atom.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================
--
gmx-users mailing list    [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected].
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to