Hi, There's a plugin in VMD called volmap which I think can be used for this kind of analysis.
------------ Bharat On Sat, Sep 29, 2012 at 9:27 PM, rama david <ramadavidgr...@gmail.com>wrote: > Hi Gromacs Users, > > I did simulation of two random coil peptides for 100ns. > after 70 ns these peptide get converted to anti parallel beta sheet > structure. > I am interested to see the water density in between these peptides w.r.t. > to time change > And at the same time the distance between the peptide.. > > I found out the distance between peptide by g_mindist > but I not found the appropriate way to calculate density of water with > respect to time > between two peptides.. > > I used g_density but it not gave me the information as per my need. > > > Is there any way to solve these problem. > > Thank you in advance.. > > With best wishes and regards.. > > Rama David > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
