Thank you for your reply, Are these Cg can be used in Gromacs.
Thank you in advance. With best wishes and regards, Rama david On Wed, Oct 10, 2012 at 6:13 PM, XAvier Periole <[email protected]> wrote: > > Martini FF cannot model changes in secondary structure ... other CG FF > can. You'll find them easily in the literature. Notably the ones from > Deserno or Derreumaux. > > > On Oct 10, 2012, at 2:03 PM, rama david wrote: > > Hi friends, >> >> I planed to use the martini force-field for my simulation study of >> peptide. >> >> The peptides are initially alpha-helix in nature. As they come together >> they formed amyloid fibre( Antiparallel Beta structure). >> >> Is it is possible to study the secondary structure backbone study by >> martini force field.???? >> >> I read in there tutorial that the Secondary structure is predefined >> therefore they are statics through out the simulation. >> Conformational changes that produces changes in Sec structure are out of >> scope in martini. only tertiary structure are free defined to change.. >> >> >> So what to do ??? >> How to use Martini FF to study secondary structure ??? >> >> Is there any way to use coarse grained FF to use for study in Sec. >> structure??? >> >> >> With Best wishes and regards, >> Rama David >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> >> * Please search the archive at http://www.gromacs.org/** >> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before >> posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> * Can't post? Read >> http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >> > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use thewww > interface or send it to [email protected]. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
