Dear Justin, The followings are the two successive commands I used:
*grompp -f justPLA.mdp -c 20LA-2layer-4chains.gro -p t-PLA.top -o justPLA-em.tpr mdrun -deffnm justPLa-em* BR Arman On Sat, Oct 13, 2012 at 3:07 PM, Justin Lemkul <[email protected]> wrote: > > > On 10/13/12 9:05 AM, Arman M. Soufiani wrote: > >> Dear Justin, >> >> I appreciate your direction. I will try to find out, however, could not >> fix >> it yet. >> >> > Providing your exact mdrun command, copied and pasted from the terminal, > is the fastest way to get a solution. > > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
