Depending on the # of atoms, 6000 frames may exceed the amount of ram a 32bit application can address (4GB). If you're having problems with the 64bit version, you should probably ask the vmd-l list.
The only workaround other than that is trjconv -skip and make a trajectory file that skips frames and will load under 4GB of ram. On 2012-10-15 08:15:34AM +0200, Albert wrote: > hello: > > I've installed gromacs in my macbookPro with 10.8 OS system. I am > trying to import gromacs trajectory which contains 6000 frames. However, > the VMD always clashed > > > > VMD(552,0xac879a28) malloc: *** mmap(size=831488) failed (error code=12) > *** error: can't allocate region > *** set a breakpoint in malloc_error_break to debug > libc++abi.dylib: terminate called throwing an exception > /Applications/VMD 1.9.1.app/Contents/MacOS/startup.command: line 7: > 552 Abort trap: 6 "$p/../Resources/VMD.app/Contents/MacOS/VMD" $* > logout > > > > Does anybody have any idae how to solve this problem? I try to install > the 64bit VMD, but it crashed as soon as it start up..... > > thank you very much > Albert > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street [email protected] | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
