Dear Shima, I am not sure whether you have gone through Justin's tutorials or not. Moreover, how intense are your fluctuations? You'd better take a look at the following link: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/06_equil.html
On Sun, Oct 21, 2012 at 10:34 AM, Shima Arasteh <[email protected] > wrote: > Dear gmx users, > > As I know, NVT equilibration is done on a ensemble with a constant V . I > got the volume plot versus time. The resulting plot has some fluctuations. > I don't know what it means?! Does it make sense? > > Also I don't know the meaning of the fluctuations in pressure of NPT and > temperature of NVT! > > Would you please give me an advice? > > > Thanks in advance. > Sincerely, > Shima > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
