Thank you Justin for your suggestions and Rama for your reference..
On Sat, Nov 3, 2012 at 7:25 PM, Justin Lemkul <[email protected]> wrote: > > > On 11/3/12 1:32 AM, Rajeswari A. wrote: > >> Thank you Rama and Justin for ur kind reply. >> >> @Justin: May i request you to kindly direct me to some references of >> multiple protein simulation in a box using standard MD? And i have seen >> the >> tutorial about multi protein simuation is under development. May i know >> when can we expect it to be ready? Once again i thank you for ur reply. >> >> > Probably not any time soon. It has been a low priority for me. It won't > be much of a tutorial, really, since the simulation itself is like any > other protein-in-water system. The only challenge is getting the proteins > placed in a box with a sensible topology associated with the system. > > > @Rama : I want to study protein aggregation. >> >> > There are numerous papers studying protein aggregation, including > atomistic and coarse-grained models, using standard MD, REMD, and discrete > MD. Most of the ones I'm familiar with involve amyloidogenic peptides, but > there may be others. I'll shamelessly plug one of my own, but there are > many, many more from other groups. > > http://pubs.acs.org/doi/abs/**10.1021/bi300113x<http://pubs.acs.org/doi/abs/10.1021/bi300113x> > > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
