On 11/10/12 8:51 AM, vidhya sankar wrote:
Dear Justin Thank you for your Previous Help Reply.
I am Doing Protein Lipid Tutorial I Have Done Successive Shrinking
(using inflate script) and EM until i reached APL (66.7 A^2) for DPPC in
protein After Doing Sufficient Em and Shrinking steps I reaches box size of
6.81123 6.81123 5.00000
At the End of Last EM
May it Deviate from initial Box Size (5 5 5) ?
The initial box size of the DPPC lipids in the tutorial is not 5x5x5. The x-y
dimensions are on the order of 6.4 nm, if I recall. The final structure in the
tutorial should have similar box vectors, but again I don't know the exact
values offhand.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
