Hi Joakim! MAny thanks for such big collection of the bilayers. Have your simulated different protein embedded in that bilayers ? What force field did you use for parametrisation of the proteins for such simulations ? From the mdp file I noticed relatively big cutoffs for vdw as well as electrostatics ( bigger than in charmm force fields). Would it possible to simulate proteins parametrized by charmm in that lipids ussing charmm parametres for whole system?
Thanks again, James 2012/12/19 Joakim Jämbeck <[email protected]>: > Joakim -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
