I will try to fix this. Thank you. Now, the problem I have is that the executables all belong to root, and as a user, I am unable to execute them. How to fix this little one?
Maria On Thu, Dec 27, 2012 at 3:36 PM, Mark Abraham <[email protected]>wrote: > sudo should not be necessary for looking in those directories. Whoever set > them up has not set up the permissions on them properly. Fix the problem, > not the symptoms - you do not want to have to configure software as root, > or you are trusting every author of that software not to trash your system > accidentally. > > On Thu, Dec 27, 2012 at 3:31 PM, maria goranovic > <[email protected]>wrote: > > > turned out to be a sudo problem. without sudo, the compiler could not > look > > into the root directories. sorry for spamming :( > > > > On Thu, Dec 27, 2012 at 2:25 PM, maria goranovic > > <[email protected]>wrote: > > > > > Yes, I can see them in printenv > > > > > > does this have anything to do with single or double precision? > > > > > > > > > On Thu, Dec 27, 2012 at 1:38 PM, Mark Abraham < > [email protected] > > >wrote: > > > > > >> Are those variables actully showing up in your environment? > > >> > > >> On Thu, Dec 27, 2012 at 11:31 AM, maria goranovic > > >> <[email protected]>wrote: > > >> > > >> > Dear All > > >> > > > >> > I am trying to install 4.5.5 on my mac. I have installed fftw3 with > > >> > --enable-float, and have used the CPPFLAGS and LDFLAGS options in my > > >> > .bashrc file. GROMACS still complains that "configure: error: Cannot > > >> find > > >> > fftw3f library". > > >> > > > >> > Why is it not able to find the libraries? > > >> > > > >> > Here are the specific details: > > >> > > > >> > content of .bashrc: > > >> > > > >> > export CPPFLAGS="-I/usr/local/include" > > >> > export LDFLAGS="-L/usr/local/lib" > > >> > > > >> > % ls /usr/local/lib/*fft* > > >> > /usr/local/lib/libfftw3f.a /usr/local/lib/libfftw3f.la > > >> > > > >> > % ls /usr/local/include/*fft* > > >> > /usr/local/include/fftw3.f /usr/local/include/fftw3.f03 > > >> > /usr/local/include/fftw3.h /usr/local/include/fftw3l.f03 > > >> > /usr/local/include/fftw3q.f03 > > >> > > > >> > Any ideas what might be going wrong? > > >> > > > >> > Thank you > > >> > > > >> > > > >> > -- > > >> > Maria G. > > >> > Technical University of Denmark > > >> > Copenhagen > > >> > -- > > >> > gmx-users mailing list [email protected] > > >> > http://lists.gromacs.org/mailman/listinfo/gmx-users > > >> > * Please search the archive at > > >> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > >> > * Please don't post (un)subscribe requests to the list. Use the > > >> > www interface or send it to [email protected]. > > >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > >> > > > >> -- > > >> gmx-users mailing list [email protected] > > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > > >> * Please search the archive at > > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > >> * Please don't post (un)subscribe requests to the list. Use the > > >> www interface or send it to [email protected]. > > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > >> > > > > > > > > > > > > -- > > > Maria G. > > > Technical University of Denmark > > > Copenhagen > > > > > > > > > > > -- > > Maria G. > > Technical University of Denmark > > Copenhagen > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Maria G. Technical University of Denmark Copenhagen -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
