Thank Tsjerk ! What is the different way that can convert the lipids ?
Regards, KT On Fri, Dec 28, 2012 at 4:27 PM, Tsjerk Wassenaar <[email protected]> wrote: > Hi KT, > > Either way should be fine. g_membed is not linked to a specific force > field, so you can use it for coarse grained models too. You can also first > set up an AA model and convert to CG afterwards. However, martinize.py only > works for the protein, so you have to convert the lipids in a different > way. > > Cheers, > > Tsjerk > > On Thu, Dec 27, 2012 at 2:00 AM, Kieu Thu Nguyen <[email protected] > >wrote: > > > Dear All, > > > > When using g_membed tool to embed protein into membrane, can i use > Martini > > forcefield to generate the topology file ? > > > > Or can i use the all-atom forcefield to generate the .top file, and after > > protein have inserted, AA representation have converted into CG > > representation by using martinize.py ? > > > > Thank for any advice ! > > Best regards, > > KT > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > > post-doctoral researcher > Biocomputing Group > Department of Biological Sciences > 2500 University Drive NW > Calgary, AB T2N 1N4 > Canada > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
