On 12/29/12 7:03 AM, Shima Arasteh wrote:

  Dear gmx users,
I want to delete some water molecules from .gro file. When I delete them, the 
modified file is not readable and I can not visualize it anymore?
Would you please guide me how I can modify a gro file?


Update the second line of the file, which indicates how many atoms are in it. If it's wrong, the file is unusable.

-Justin

--
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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