Oh, you have an Additional line after vector size box…. I thought you said to remove that blank line
Xu Dong Huang Chemical & Biochemical Engineering Rutgers School of Engineering [email protected] On Jan 9, 2013, at 7:58 PM, Xu Dong Huang <[email protected]> wrote: > @Justin, > > I did that, and it still says I have 103. > > Xu Dong Huang > Chemical & Biochemical Engineering > Rutgers School of Engineering > [email protected] > > On Jan 9, 2013, at 7:49 PM, Xu Dong Huang <[email protected]> wrote: > >> @Justin, >> >> I did what you suggested, and I still can't load my molecule in VMD. Maybe I >> am still doing something wrong with the new line character thing. >> >> >> Xu Dong Huang >> Chemical & Biochemical Engineering >> Rutgers School of Engineering >> [email protected] >> >> On Jan 9, 2013, at 7:22 PM, Xu Dong Huang <[email protected]> wrote: >> >>> @ Justin, >>> >>> I laughed. :) Thank you. I can't believe I miss the smallest and most >>> rudimentary things. >>> Thanks again, >>> Xu Dong Huang >>> Chemical & Biochemical Engineering >>> Rutgers School of Engineering >>> [email protected] >>> >>> On Jan 9, 2013, at 7:20 PM, Justin Lemkul <[email protected]> wrote: >>> >>>> >>>> >>>> On 1/9/13 7:16 PM, Xu Dong Huang wrote: >>>>> @ Justin, >>>>> >>>>> Thanks for always saving me from my mistakes. But I don't quite >>>>> understand what is a new line character? >>>>> >>>> >>>> The thing you get when you press enter. >>>> >>>> http://en.wikipedia.org/wiki/Newline#In_programming_languages >>>> >>>> Note that Google has plenty more to say ;) >>>> >>>> There should not be a blank line at the end of the .gro file, though, but >>>> to be correctly parsed by VMD, the line must terminate with a '\n' >>>> character. So at the end of your box vector line, hit return then >>>> backspace. >>>> >>>> -Justin >>>> >>>> -- >>>> ======================================== >>>> >>>> Justin A. Lemkul, Ph.D. >>>> Research Scientist >>>> Department of Biochemistry >>>> Virginia Tech >>>> Blacksburg, VA >>>> jalemkul[at]vt.edu | (540) 231-9080 >>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>>> >>>> ======================================== >>>> -- >>>> gmx-users mailing list [email protected] >>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>> * Please search the archive at >>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>> * Please don't post (un)subscribe requests to the list. Use the www >>>> interface or send it to [email protected]. >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to [email protected]. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
