Thank Justin and Peter so much ! Can i make a new box (it's size is not a multiples of the size of the previous box) from a smaller lipid bilayer box ?
I don't see genconf -nbox can do that. On Fri, Jan 11, 2013 at 9:20 AM, Peter Lai <[email protected]> wrote: > Kieu Thu Nguyen <[email protected]> wrote: > > >Dear All, > > > >I see in MD simulations, the number of lipids is 128 or multiples of > >128. > >Can someone tell me why ? > >Whether can i choose another number of lipids ? > > > >Thanks in advance ! > >KT > >-- > >gmx-users mailing list [email protected] > >http://lists.gromacs.org/mailman/listinfo/gmx-users > >* Please search the archive at > >http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >* Please don't post (un)subscribe requests to the list. Use the > >www interface or send it to [email protected]. > >* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > probably because they are using original 128-lipid coordinates from > someone like tieleman or klauda. You can use any arbitrary # of lipids > appropriate to the size of your intended system (like scaling it so that an > embedded protein is shielded by lipids from its periodic image) > -- > Sent from my Android phone with K-9 Mail. Please excuse my brevity. > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
