@Bogdan : It differs from the normal gromacs setup as this PDB write is expected to happen during the run. (While the simulation is still running). I have posted this in gmx-developers post as I felt its more apt after Justins advice.
-- View this message in context: http://gromacs.5086.n6.nabble.com/Turn-on-pdb-output-after-every-step-tp5004542p5004586.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

