Dear Bogdan Costescu, Thank you for your valuable suggestion.
Regards, Ramesh. On Mon, Jan 14, 2013 at 8:20 PM, Bogdan Costescu <[email protected]>wrote: > On Sat, Jan 12, 2013 at 10:04 AM, ramesh cheerla > <[email protected]> wrote: > > This probably means your > > constraint lengths are too long compared to the domain decomposition cell > > size. Decrease the number of domain decomposition grid cells > > This gives another possible solution. You decrease the number of DD > grid cells by reducing the numbers of cores on which mdrun runs. Or, > for the same number of cores, you can control better the decomposition > using the '-dd' option in case the constraints are aligned to one of > the 3 main directions. > > Cheers, > Bogdan > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
