On 1/17/13 10:56 AM, vidhya sankar wrote:
Dear Justin Thank you for your Previous Reply Mail
I am using GridMAt MD Script When I run the APL
Headgroup Calculation It runs well But I Have got Output With the Following
Comment in My Command Prompt
looking for offending protein atoms...
There are 143 protein atoms within the headgroups of the top leaflet
There are 65 protein atoms within the headgroups of the bottom leaflet
To Avoid this Which Parameter Should I adjust Either precision Parameter or
P_value Parameter
This is the correct output. If you are doing an APL calculation in the presence
of a protein, that needs to be taken into account.
You can send GridMAT-MD questions directly to me rather than spamming the list
with non-Gromacs questions.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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