Thank Justin ! That is APL. How about bilayer thickness ? I made density.xvg file of headgroup from using g_density.
On Mon, Jan 21, 2013 at 7:31 PM, Justin Lemkul <[email protected]> wrote: > > > On 1/21/13 5:12 AM, Kieu Thu Nguyen wrote: > >> Dear All, >> >> I want to know that my lipid bilayer is equilibrated or not yet. So i want >> to calculate the change of area per lipid and the bilayer thickness versus >> time. >> >> Which tool or method should i use ? >> >> > Extract box vectors over time from the .edr file, then use a script of > your own creation to multiply them and divide by the number of lipids per > leaflet. Of course, that goes out the window if there is a protein present. > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
