On 1/26/13 1:30 PM, Albert wrote:
On 01/26/2013 06:53 PM, Justin Lemkul wrote:

What exactly did you enter at the make_ndx prompt?

-Justin

1|25

protein, water and ions....



What types of ions do you have? I can reproduce this problem for a protein with ions bound to it, which are numbered discontinuously with water and ions in solution.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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