Dear Gromacs users!
I have trajectory from which I want to investigate dynamics of all possible salt bridges (E.g distance between adjacent + and - charged residues) of my protein during the simulation As I understood ussage of g_saltbr -t -sep could be suitable for such thing but I'm not sure in validness of -t for definition of the native salt bridges ( e.g with the default settings g_saltbr produced huge number of all possible combinations of the polar contacts within my protein ). Is there any others gromacs tols for such investigation? James -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
