hello:
I am trying to build membrane system with g_menbed, but it said:
Back Off! I just backed up membed.dat to ./#membed.dat.2#
You can membed your protein now by:
mdrun -s input.tpr -membed membed.dat -o traj.trr -c membed.pdb -e
ener.edr -nt 1 -cpt -1 -mn index.ndx -mp merged.top -v -stepout 100
Please cite:
Wolf et al, J Comp Chem 31 (2010) 2169-2174.
does it means that g_membed deprecated from Gromacs-4.6 and we must use
mdrun instead?
THX
Albert
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