On 2/12/13 11:29 AM, Kavyashree M wrote:
Dear Users,
How can intra-protein hydrophobic contacts be found
for a trajectory. Most of the mails regarding this in the
list is regarding hydrophobic contacts between chains
or ligand and protein. So kindly help.
Create a group of hydrophobic atoms and choose that group at both prompts with
g_mindist -on.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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